blob: 6bc26e1f1975df2a8f9673e819ed726623e56ecb (
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diff -up ugene-1.22.0/src/libs_3rdparty/samtools/samtools.pri.dont_hardcode_includes ugene-1.22.0/src/libs_3rdparty/samtools/samtools.pri
--- ugene-1.22.0/src/libs_3rdparty/samtools/samtools.pri.dont_hardcode_includes 2016-03-31 07:21:56.000000000 -0500
+++ ugene-1.22.0/src/libs_3rdparty/samtools/samtools.pri 2016-06-02 17:49:02.383069490 -0500
@@ -3,7 +3,7 @@ UGENE_RELATIVE_DESTDIR = ''
TEMPLATE = lib
CONFIG +=thread debug_and_release staticlib warn_off
-INCLUDEPATH += src src/samtools ../../include /usr/include
+INCLUDEPATH += src src/samtools ../../include
win32 : INCLUDEPATH += src/samtools/win32
DEFINES+="_FILE_OFFSET_BITS=64" _LARGEFILE64_SOURCE _USE_KNETFILE
win32 : DEFINES += _USE_MATH_DEFINES "inline=__inline" "__func__=__FUNCTION__" "R_OK=4" "atoll=_atoi64" "alloca=_alloca"
diff -up ugene-1.22.0/src/plugins_3rdparty/variants/variants.pri.dont_hardcode_includes ugene-1.22.0/src/plugins_3rdparty/variants/variants.pri
--- ugene-1.22.0/src/plugins_3rdparty/variants/variants.pri.dont_hardcode_includes 2016-03-31 07:22:09.000000000 -0500
+++ ugene-1.22.0/src/plugins_3rdparty/variants/variants.pri 2016-06-02 20:26:35.265356432 -0500
@@ -20,7 +20,7 @@ use_bundled_zlib() {
win32 : LIBS += -lwsock32
-INCLUDEPATH += src ../../include /usr/include
+INCLUDEPATH += src ../../include
INCLUDEPATH += ../../libs_3rdparty/samtools/src/samtools
INCLUDEPATH += ../../libs_3rdparty/samtools/src
INCLUDEPATH += ../../libs_3rdparty/samtools/src/samtools/bcftools
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