summaryrefslogtreecommitdiff
path: root/academic/fiji/fiji.SlackBuild
blob: 6ab84821d488ab7ca45437fc1f82d75258e0c322 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
#!/bin/bash

# Slackware build script for fiji

# Copyright 2018-2022 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
# permitted provided that the following conditions are met:
#
# 1. Redistributions of this script must retain the above copyright
#    notice, this list of conditions and the following disclaimer.
#
#  THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
#  WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
#  MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO
#  EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
#  SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
#  PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
#  OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
#  WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
#  OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
#  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

cd $(dirname $0) ; CWD=$(pwd)

PRGNAM=fiji
VERSION=${VERSION:-20220414_1745}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
PKGTYPE=${PKGTYPE:-tgz}

DIRNAM=Fiji.app

if [ -z "$ARCH" ]; then
  case "$( uname -m )" in
    i?86) ARCH=i386 ;;
    arm*) ARCH=arm ;;
       *) ARCH=$( uname -m ) ;;
  esac
fi

# If the variable PRINT_PACKAGE_NAME is set, then this script will report what
# the name of the created package would be, and then exit. This information
# could be useful to other scripts.
if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then
  echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE"
  exit 0
fi

TMP=${TMP:-/tmp/SBo}
PKG=$TMP/package-$PRGNAM
OUTPUT=${OUTPUT:-/tmp}

set -e

# Stop if arch is not supported
if [ "$ARCH" != "i386" ] && [ "$ARCH" != "x86_64" ]; then
  printf "\n\n$ARCH is not supported... \n"
  exit 1
fi

rm -rf $PKG
mkdir -p $TMP $PKG $OUTPUT
cd $TMP
rm -rf $DIRNAM
tar xvf $CWD/${PRGNAM}-linux64.tar.gz
cd $DIRNAM
chown -R root:root .
find -L . \
 \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
  -o -perm 511 \) -exec chmod 755 {} \; -o \
 \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
  -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;

# Rename the binary we need
mv ImageJ-linux64 $PRGNAM

# We will put here two tools, so they are not run at startup.
mkdir -p unused
cd unused

# Remove the check for required updates. If you want it, comment out
# the next line. You can "enable" it any time by just placing it in the
# plugins/Scripts/Plugins/AutoRun/ folder.
mv ../plugins/Scripts/Plugins/AutoRun/Check_Required_Update_Sites.js .

# We do not want updates when the program is installed. As above, it
# is your system, so if you want this functionality, then comment out
# the line below. You can always "enable" it, by placing it in the jars
# folder.
mv ../jars/imagej-updater-* .

cd ..

# Update plugins, so that the latest are included in the package. This
# will download stuff during the package creation, something that is
# against the policy of SlackBuilds.org. However, it is _your_ system,
# so if you _really_ want this, uncomment the line below.
# ./$PRGNAM --update list-local-only

# Copy the folders, db.xml and the renamed binary to /opt
mkdir -p $PKG/opt/$PRGNAM
cp -a \
  Contents \
  images \
  jars \
  java \
  lib \
  licenses \
  luts \
  macros \
  plugins \
  retro \
  scripts \
  db.xml.gz \
  $PRGNAM \
$PKG/opt/$PRGNAM

# If a file called "ImageJ2.desktop" is not present in the directory
# of fiji, it will create (and re-create it if you delete it) the file
# "~/.local/share/applications/ImageJ2.desktop" upon start. So, let it
# have its desktop file. This is a very stupid workaround, but it is
# really the best I could think of. At first I thought that deleting
# "plugins/Scripts/Plugins/Utilities/Create_Desktop_Icon.bsh" will do
# the trick, but no...
cp $CWD/ImageJ2.desktop $PKG/opt/$PRGNAM

# Install the simple wrapper
install -D -m755 $CWD/$PRGNAM $PKG/usr/bin/$PRGNAM

find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
  | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true

mkdir -p $PKG/usr/share/{applications,pixmaps}
cp $CWD/ImageJ2.desktop $PKG/usr/share/applications
cp images/icon.png $PKG/usr/share/pixmaps/$PRGNAM.png

mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
cp -a README.md WELCOME.md $PKG/usr/doc/$PRGNAM-$VERSION
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References

mkdir -p $PKG/install
cat $CWD/slack-desc > $PKG/install/slack-desc
cat $CWD/doinst.sh > $PKG/install/doinst.sh

cd $PKG
/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE