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@@ -14,6 +14,6 @@ bowtie2: good at aligning reads of about 50 up to 100s or 1,000s of
bowtie2: characters, and particularly good at aligning to relatively long
bowtie2: (e.g. mammalian) genomes.
bowtie2:
-bowtie2: Home: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
-bowtie2: References: /usr/doc/bowtie2-2.1.0/References
-bowtie2:
+bowtie2: Home: https://bowtie-bio.sf.net/bowtie2
+bowtie2: Reference: Langmead B, Salzberg S. Fast gapped-read alignment with
+bowtie2: Bowtie 2. Nature Methods. 2012, 9:357-359.