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authorB. Watson <yalhcru@gmail.com>2020-10-11 15:36:48 -0400
committerWilly Sudiarto Raharjo <willysr@slackbuilds.org>2020-10-17 09:36:37 +0700
commit57ba91195da6ef343c720f305d0cddf056f78d10 (patch)
treeca9d2ff580ce1a3265a7cd39dce4de6e75c9a23b /academic/ViennaRNA
parenta37908e881a0fcf2aef608cacbccbb2954ab36eb (diff)
downloadslackbuilds-57ba91195da6ef343c720f305d0cddf056f78d10.tar.gz
academic/ViennaRNA: Fix README.
Signed-off-by: B. Watson <yalhcru@gmail.com> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/ViennaRNA')
-rw-r--r--academic/ViennaRNA/README33
1 files changed, 18 insertions, 15 deletions
diff --git a/academic/ViennaRNA/README b/academic/ViennaRNA/README
index 6ad531d628..a82c7160b2 100644
--- a/academic/ViennaRNA/README
+++ b/academic/ViennaRNA/README
@@ -7,8 +7,9 @@ A tutorial (see /usr/doc/$PRGNAM-$VERSION/RNA-tutorial-$VERSION.pdf)
and examples can be found in /usr/share/$PRGNAM/tutorial and
/usr/share/$PRGNAM/examples
-For those who wish to link the Vienna package to their own C, perl or python programs (see below),
-the RNAlib Reference Manual can be assessed at:
+For those who wish to link the Vienna package to their own C, perl
+or python programs (see below), the RNAlib Reference Manual can be
+assessed at:
https://www.tbi.univie.ac.at/RNA/ViennaRNA/doc/html/index.html
(or unpacked from the src: $PRGNAM-$VERSION/doc/html/)
@@ -22,29 +23,31 @@ Amongst other things, the ViennRNA implementations allow you to:
- compute various equilibrium probabilities
- calculate suboptimal structures in a given energy range
- compute local structures in long sequences
-- predict consensus secondary structures from a multiple sequence alignment
+- predict consensus secondary structures from a multiple sequence
+ alignment
- predict melting curves
- search for sequences folding into a given structure
- compare two secondary structures
- predict hybridization structures of two RNA molecules
-The package includes `Perl 5` and `Python 3` modules that give
-access to almost all functions of the C library from within the respective
+The package includes `Perl 5` and `Python 3` modules that give access
+to almost all functions of the C library from within the respective
scripting languages. For this reason, python3 is a dependency
-The `Python 2` module can be built as well, or instead of the one for `Python 3`;
-just edit the SlackBuild or run it by setting build options PYTHON=yes PYTHON3=no.
-(e.g. in sbopkg or run it from the commandline -within the directory containing
-the SlackBuild script and downloaded source archive- as:
-`PYTHON=yes PYTHON3=no ./ViennaRNA.SlackBuild`)
+The `Python 2` module can be built as well, or instead of the one
+for `Python 3`; just edit the SlackBuild or run it by setting build
+options PYTHON=yes PYTHON3=no. (e.g. in sbopkg or run it from
+the commandline -within the directory containing the SlackBuild
+script and downloaded source archive- as: `PYTHON=yes PYTHON3=no
+./ViennaRNA.SlackBuild`)
There is also a set of programs for analyzing sequence and distance
-data using split decomposition, statistical geometry, and cluster methods.
-They are not maintained any more and not built by default.
+data using split decomposition, statistical geometry, and cluster
+methods. They are not maintained any more and not built by default.
-The code very rarely uses static arrays, and all programs should work for
-sequences up to a length of 32,700 (if you have huge amounts of memory that
-is).
+The code very rarely uses static arrays, and all programs should work
+for sequences up to a length of 32,700 (if you have huge amounts of
+memory that is).
For further info see: