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Set the EXECDIR for nikto to /usr/lib/nikto
--- nikto-2.1.5.orig/nikto.conf 2015-11-07 19:48:17.854292534 -0700
+++ nikto-2.1.5/nikto.conf 2015-11-07 19:49:23.270289730 -0700
@@ -61,7 +61,7 @@
CHECKMETHODS=HEAD GET
# If you want to specify the location of any of the files, specify them here
-# EXECDIR=/opt/nikto # Location of Nikto
+EXECDIR=/usr/lib/nikto # Location of Nikto
# PLUGINDIR=/opt/nikto/plugins # Location of plugin dir
# DBDIR=/opt/nikto/databases # Location of database dir
# TEMPLATEDIR=/opt/nikto/templates # Location of template dir
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