#!/bin/sh # Slackware build script for primer3 # Written by Petar Petrov, <ppetrov@paju.oulu.fi> and # hereby submitted to the public domain # Thanks to Niels Horn for correcting the CFLAGS. # THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING # USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_ # RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT. PRGNAM=primer3 VERSION=${VERSION:-2.2.3} BUILD=${BUILD:-2} TAG=${TAG:-_SBo} if [ -z "$ARCH" ]; then case "$( uname -m )" in i?86) ARCH=i486 ;; arm*) ARCH=arm ;; *) ARCH=$( uname -m ) ;; esac fi CWD=$(pwd) TMP=${TMP:-/tmp/SBo} PKG=$TMP/package-$PRGNAM OUTPUT=${OUTPUT:-/tmp} if [ "$ARCH" = "i486" ]; then SLKCFLAGS="-O2 -march=i486 -mtune=i686" LIBDIRSUFFIX="" elif [ "$ARCH" = "i686" ]; then SLKCFLAGS="-O2 -march=i686 -mtune=i686" LIBDIRSUFFIX="" elif [ "$ARCH" = "x86_64" ]; then SLKCFLAGS="-O2 -fPIC" LIBDIRSUFFIX="64" else SLKCFLAGS="-O2" LIBDIRSUFFIX="" fi set -e rm -rf $PKG mkdir -p $TMP $PKG $OUTPUT cd $TMP rm -rf $PRGNAM-$VERSION tar xvf $CWD/$PRGNAM-$VERSION.tar.gz cd $PRGNAM-$VERSION chown -R root:root . find . \ \( -perm 777 -o -perm 775 -o -perm 711 -o -perm 555 -o -perm 511 \) \ -exec chmod 755 {} \; -o \ \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \ -exec chmod 644 {} \; cd ./src #Use our CFLAGS sed -i "/^CFLAGS/s/=/+=/" Makefile CFLAGS="$SLKCFLAGS" \ CXXFLAGS="$SLKCFLAGS" \ make # This is recommended, but the tests take a really long time. # Be patient if you uncomment the next line. # make test install -D -m755 primer3_core $PKG/usr/bin/primer3_core install -D -m755 long_seq_tm_test $PKG/usr/bin/long_seq_tm_test install -D -m755 ntdpal $PKG/usr/bin/ntdpal install -D -m755 ntthal $PKG/usr/bin/ntthal install -D -m755 oligotm $PKG/usr/bin/oligotm # eprimer32 from EMBOSS expects the binary to be called primer32_core ln -s primer3_core $PKG/usr/bin/primer32_core cd $TMP/$PRGNAM-$VERSION find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION cp -a \ src/release_notes.txt COPYING.txt example primer3_manual.htm \ $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References mkdir -p $PKG/install cat $CWD/slack-desc > $PKG/install/slack-desc cd $PKG /sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}