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* academic/cistrome-MACS: Added (Model-based Analysis of ChIP-Seq).Petar Petrov2013-12-14
* academic/cistrome-CEAS: Added (Cis-regulatory Element Annotation).Petar Petrov2013-12-14
* academic/EMBASSY: Updated for version 6.6.0.Petar Petrov2013-12-14
* academic/EMBOSS: Updated for version 6.6.0.Petar Petrov2013-12-14
* libraries/libisoburn: Updated for version 1.3.4.Nishant Limbachia2013-12-14
* libraries/libisofs: Updated for version 1.3.4.Nishant Limbachia2013-12-14
* libraries/libburn: Updated for version 1.3.4.Nishant Limbachia2013-12-14
* academic/vcftools: Added (A program designed for working with VCF).Petar Petrov2013-12-14
* academic/ugene: Updated for version 1.13.0.Petar Petrov2013-12-14
* academic/tophat: Added (Splice junction mapper for RNA-Seq reads).Petar Petrov2013-12-14
* academic/topdraw: Added (A sketchpad for protein topology diagrams).Petar Petrov2013-12-14
* desktop/thunar-sendto-clamtk: Updated for version 0.04.Petar Petrov2013-12-14
* academic/tabix: Added (Generic indexer).Petar Petrov2013-12-14
* academic/t_coffee: Updated for version 10.00.r1613.Petar Petrov2013-12-14
* games/supertux2: Updated for version 0.3.4.Petar Petrov2013-12-14
* academic/primer3: Updated for version 2.3.6.Petar Petrov2013-12-14
* academic/pamlX: Added (A GUI for PAML).Petar Petrov2013-12-14
* academic/paml: Added (Phylogenetic Analysis by Maximum Likelihood).Petar Petrov2013-12-14
* desktop/murrine-themes: Updated for version 0.98.6.Petar Petrov2013-12-14
* system/clamtk: Updated for version 5.01.Petar Petrov2013-12-14
* academic/mrbayes: Updated for version 3.2.2.Petar Petrov2013-12-14
* academic/mkDSSP: Updated for version 2.2.1.Petar Petrov2013-12-14
* academic/mafft: Updated for version 7.130.Petar Petrov2013-12-14
* academic/cufflinks: Added (reference-guided assembler for RNA-Seq).Petar Petrov2013-12-14
* academic/samtools: Added (Sequence Alignment/Map Tools).Petar Petrov2013-12-14
* perl/perl-Time-Piece: Added (Perl Time::Piece module).Petar Petrov2013-12-14
* perl/perl-Text-CSV: Added (Perl Text::CSV module).Petar Petrov2013-12-14
* academic/bowtie2: Added (A tool for aligning sequencing reads).Petar Petrov2013-12-14
* academic/bowtie: Updated for version 1.0.0.Petar Petrov2013-12-14
* academic/PhyML: Updated for version 20131112.Petar Petrov2013-12-14
* system/tagainijisho: Added (Japanese dictionary and kanji lookup).Alex-P. Natsios2013-12-14
* games/fortune_doctor_who: Added (quotes from Doctor Who).B. Watson2013-12-14
* system/gparted: Updated for version 0.17.0.Erik Hanson2013-12-14
* development/avra: Added (Atmel AVR Microcontrollers Assembler).flanker2013-12-14
* perl/perl-Scalar-List-Utils: Added (Scalar and List Subroutines).LEVAI Daniel2013-12-14
* network/mangler: Removed (no SBo maintainer).Willy Sudiarto Raharjo2013-12-14
* misc/WhatPulse: Removed (no SBo maintainer).Willy Sudiarto Raharjo2013-12-14
* libraries/notify-sharp: Updated for version 0.4.1.Donald Cooley2013-12-14
* libraries/ndesk-dbus-glib: Removed (Replaced by dbus-sharp-glib).Donald Cooley2013-12-14
* libraries/ndesk-dbus: Removed (Replaced by dbus-sharp).Donald Cooley2013-12-14
* libraries/dbus-sharp-glib: Added (a C# implementation of dbus-glib).Donald Cooley2013-12-14
* libraries/dbus-sharp: Added (C# implementation of D-Bus).Donald Cooley2013-12-14
* graphics/pinta: Updated for version 20131027.Willy Sudiarto Raharjo2013-12-14
* development/monodevelop-database: Updated for version 4.2.1.Willy Sudiarto Raharjo2013-12-14
* development/monodevelop-debugger-gdb: Updated for version 4.2.1.Willy Sudiarto Raharjo2013-12-14
* development/monodevelop: Updated for version 4.2.1.Willy Sudiarto Raharjo2013-12-14
* development/mono-addins: Updated for version 20131127.Andre Barboza2013-12-14
* libraries/gtk-sharp: Updated for version 2.12.22.Donald Cooley2013-12-14
* development/mono: Updated for version 3.2.3.Sebastián Salazar Molina2013-12-14
* system/syslog-ng: Updated for version 3.5.2.Mario Preksavec2013-12-14
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