diff options
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/vcftools/README | 8 | ||||
| -rw-r--r-- | academic/vcftools/slack-desc | 2 | ||||
| -rw-r--r-- | academic/vcftools/vcftools.SlackBuild | 14 | ||||
| -rw-r--r-- | academic/vcftools/vcftools.info | 6 |
4 files changed, 15 insertions, 15 deletions
diff --git a/academic/vcftools/README b/academic/vcftools/README index de03f3235e..2b9a3a4b53 100644 --- a/academic/vcftools/README +++ b/academic/vcftools/README @@ -11,8 +11,8 @@ compatibility with older versions. If you make use of VCFtools in your research, the authors would appreciate a citation of the following paper: -The Variant Call Format and VCFtools, -Petr Danecek, Adam Auton, Goncalo Abecasis, Cornelis A. Albers, -Eric Banks, Mark A. DePristo, Robert Handsaker, Gerton Lunter, -Gabor Marth, Stephen T. Sherry, Gilean McVean, Richard Durbin +The Variant Call Format and VCFtools, +Petr Danecek, Adam Auton, Goncalo Abecasis, Cornelis A. Albers, +Eric Banks, Mark A. DePristo, Robert Handsaker, Gerton Lunter, +Gabor Marth, Stephen T. Sherry, Gilean McVean, Richard Durbin and 1000 Genomes Project Analysis Group, Bioinformatics, 2011 diff --git a/academic/vcftools/slack-desc b/academic/vcftools/slack-desc index 3486224761..f991177ca4 100644 --- a/academic/vcftools/slack-desc +++ b/academic/vcftools/slack-desc @@ -15,5 +15,5 @@ vcftools: VCF files: validating, merging, comparing and calculate some vcftools: basic population genetic statistics. vcftools: vcftools: Home: http://vcftools.sourceforge.net/ -vcftools: References: /usr/doc/vcftools-0.1.14_14_g2543f81/References +vcftools: References: /usr/doc/vcftools-0.1.14_33_g1d27c24/References vcftools: diff --git a/academic/vcftools/vcftools.SlackBuild b/academic/vcftools/vcftools.SlackBuild index 94df58aa84..59b194bf27 100644 --- a/academic/vcftools/vcftools.SlackBuild +++ b/academic/vcftools/vcftools.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for vcftools -# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com +# Copyright 2013-2017 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -23,15 +23,15 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=vcftools -VERSION=${VERSION:-0.1.14_14_g2543f81} +VERSION=${VERSION:-0.1.14_33_g1d27c24} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} -GITVER=2543f812d45755cbe46a1d5d6bbd16da6a55b0c5 +GITVER=1d27c245276cc9b10c4b20e1fedc5e4adfcc0123 if [ -z "$ARCH" ]; then case "$( uname -m )" in - i?86) ARCH=i486 ;; + i?86) ARCH=i586 ;; arm*) ARCH=arm ;; *) ARCH=$( uname -m ) ;; esac @@ -42,8 +42,8 @@ TMP=${TMP:-/tmp/SBo} PKG=$TMP/package-$PRGNAM OUTPUT=${OUTPUT:-/tmp} -if [ "$ARCH" = "i486" ]; then - SLKCFLAGS="-O2 -march=i486 -mtune=i686" +if [ "$ARCH" = "i586" ]; then + SLKCFLAGS="-O2 -march=i586 -mtune=i686" LIBDIRSUFFIX="" elif [ "$ARCH" = "i686" ]; then SLKCFLAGS="-O2 -march=i686 -mtune=i686" @@ -83,7 +83,7 @@ CPPFLAGS="$SLKCFLAGS" \ --docdir=/usr/doc/$PRGNAM-$VERSION \ --build=$ARCH-slackware-linux make -make DESTDIR=$PKG install +make DESTDIR=$PKG install PMDIR=share/perl5/vendor_perl # Copy examples mkdir -p $PKG/usr/share/$PRGNAM diff --git a/academic/vcftools/vcftools.info b/academic/vcftools/vcftools.info index 32903bedbb..9b1265f2b7 100644 --- a/academic/vcftools/vcftools.info +++ b/academic/vcftools/vcftools.info @@ -1,8 +1,8 @@ PRGNAM="vcftools" -VERSION="0.1.14_14_g2543f81" +VERSION="0.1.14_33_g1d27c24" HOMEPAGE="https://vcftools.github.io/" -DOWNLOAD="https://github.com/vcftools/vcftools/archive/2543f81/vcftools-2543f812d45755cbe46a1d5d6bbd16da6a55b0c5.tar.gz" -MD5SUM="9df1c409022985ee1ddd922fbf059d73" +DOWNLOAD="https://github.com/vcftools/vcftools/archive/1d27c24/vcftools-1d27c245276cc9b10c4b20e1fedc5e4adfcc0123.tar.gz" +MD5SUM="5220a370d011962a6023a2e696d91e14" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="tabix" |