diff options
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/ugene/README | 18 | ||||
| -rw-r--r-- | academic/ugene/slack-desc | 2 | ||||
| -rw-r--r-- | academic/ugene/ugene.SlackBuild | 2 | ||||
| -rw-r--r-- | academic/ugene/ugene.info | 8 |
4 files changed, 17 insertions, 13 deletions
diff --git a/academic/ugene/README b/academic/ugene/README index a163595629..5ed2a5eaa6 100644 --- a/academic/ugene/README +++ b/academic/ugene/README @@ -21,19 +21,28 @@ be launched on local resources or in a High Performance Computing built-in plugin system and structured UGENE API make it possible to extend the toolkit with new functionality. +CITING: +Unipro UGENE: a unified bioinformatics toolkit +Konstantin Okonechnikov; Olga Golosova; Mikhail Fursov; the UGENE team +Bioinformatics 2012 28: 1166-1167 + EXTERNAL TOOLS UGENE can use and drive a number of external tools, providing a nice and unified GUI. These are not needed at build time, but are highly recommended for the complete (and extended) functionality of the -program. Almost all of them can be found at SlackBuilds.org: +program. All of them are available at SlackBuilds.org: +- bedGraphToBigWig (Convert bedGraph to bigWig file) - bedtools (A powerful toolset for genome arithmetic) - bowtie (A short read aligner of DNA sequences) - bowtie2 (A tool for aligning sequencing reads) - bwa (Burrows-Wheeler Aligner) - cap3 (CAP3: A DNA sequence assembly program) - cistrome-CEAS (CEAS: Cis-regulatory Element Annotation System) +- cistrome-conductGO (Find the top-n highest expressed TFs) +- cistrome-extra (Cistrome Applications Harvard extra apps) - cistrome-MACS (MACS: Model-based Analysis of ChIP-Seq) +- cistrome-mdseqpos (Cistrome Applications Harvard mdseqpos) - clustalo (Clustal Omega) - clustalw (Multiple Sequence Alignment) - cufflinks (A reference-guided assembler for RNA-Seq experiments) @@ -52,9 +61,4 @@ program. Almost all of them can be found at SlackBuilds.org: - vcftools (A program package designed for working with VCF files) Alternatively, check the program's website if you want to get them -precompiled. - -CITING: -Unipro UGENE: a unified bioinformatics toolkit -Konstantin Okonechnikov; Olga Golosova; Mikhail Fursov; the UGENE team -Bioinformatics 2012 28: 1166-1167 +precompiled: http://ugene.net/external.html diff --git a/academic/ugene/slack-desc b/academic/ugene/slack-desc index eaaddfa2e8..7f8cef8e87 100644 --- a/academic/ugene/slack-desc +++ b/academic/ugene/slack-desc @@ -16,4 +16,4 @@ ugene: user nterface. The toolkit supports multiple biological data formats ugene: and allows the retrieval of data from remote data sources. ugene: ugene: Home: http://ugene.net/ -ugene: References: /usr/doc/ugene-1.21.0/References +ugene: References: /usr/doc/ugene-1.22.0/References diff --git a/academic/ugene/ugene.SlackBuild b/academic/ugene/ugene.SlackBuild index 3d8a8bce86..91d53b0ec7 100644 --- a/academic/ugene/ugene.SlackBuild +++ b/academic/ugene/ugene.SlackBuild @@ -23,7 +23,7 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=ugene -VERSION=${VERSION:-1.21.0} +VERSION=${VERSION:-1.22.0} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} diff --git a/academic/ugene/ugene.info b/academic/ugene/ugene.info index 1bde13608d..4ccb5b9d59 100644 --- a/academic/ugene/ugene.info +++ b/academic/ugene/ugene.info @@ -1,10 +1,10 @@ PRGNAM="ugene" -VERSION="1.21.0" +VERSION="1.22.0" HOMEPAGE="http://ugene.net/" -DOWNLOAD="http://sourceforge.net/projects/sboppetrov/files/ugene/ugene-1.21.0.tar.gz" -MD5SUM="d9745720a28e448b3c92bf7d03d510db" +DOWNLOAD="http://sourceforge.net/projects/sboppetrov/files/ugene/ugene-1.22.0.tar.gz" +MD5SUM="c876d46c75628a96ee1be5ae86b33b9c" DOWNLOAD_x86_64="" MD5SUM_x86_64="" -REQUIRES="qt5" +REQUIRES="qt5 libxkbcommon" MAINTAINER="Petar Petrov" EMAIL="slackalaxy@gmail.com" |