diff options
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/lalnview/References | 2 | ||||
| -rw-r--r-- | academic/lalnview/lalnview.SlackBuild | 40 | ||||
| -rw-r--r-- | academic/lalnview/lalnview.desktop | 4 | ||||
| -rw-r--r-- | academic/lalnview/lalnview.info | 2 | ||||
| -rw-r--r-- | academic/lalnview/slack-desc | 4 |
5 files changed, 34 insertions, 18 deletions
diff --git a/academic/lalnview/References b/academic/lalnview/References index 2ba7f071bb..30bca65f96 100644 --- a/academic/lalnview/References +++ b/academic/lalnview/References @@ -1,5 +1,3 @@ -References: - Duret, L., Gasteiger, E. and Perrière, G. (1996) LalnView: a graphical viewer for pairwise sequence alignments. Comput. Applic. Biosci., 12, 507-510 diff --git a/academic/lalnview/lalnview.SlackBuild b/academic/lalnview/lalnview.SlackBuild index 7b2f004dd3..1b25bcdb9d 100644 --- a/academic/lalnview/lalnview.SlackBuild +++ b/academic/lalnview/lalnview.SlackBuild @@ -1,16 +1,32 @@ #!/bin/sh # Slackware build script for lalnview -# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and -# hereby submitted to the public domain -# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING -# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_ -# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT. +# Copyright 2011 Petar Petrov, ppetrov@paju.oulu.fi +# All rights reserved. +# +# Redistribution and use of this script, with or without modification, is +# permitted provided that the following conditions are met: +# +# 1. Redistributions of this script must retain the above copyright +# notice, this list of conditions and the following disclaimer. +# +# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED +# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO +# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, +# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; +# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, +# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR +# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF +# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + +# Thanks to Niels Horn for correcting the CFLAGS. PRGNAM=lalnview VERSION=${VERSION:-3.0} -BUILD=${BUILD:-1} +BUILD=${BUILD:-2} TAG=${TAG:-_SBo} if [ -z "$ARCH" ]; then @@ -56,20 +72,22 @@ find . \ \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \ -exec chmod 644 {} \; -OPT="$SLKCFLAGS" \ - make -install -D -m755 lalnview $PKG/usr/bin/lalnview +# Point to the correct place of lalnview.help +sed -i "s:lalnview.help:/usr/doc/$PRGNAM-$VERSION/lalnview.help:" MF_MainWindow.cxx + +OPT="$SLKCFLAGS" make +install -D -m755 lalnview $PKG/usr/bin/$PRGNAM find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true -# Menu item and icon (couldn't find an icon, so i made one myself. I know it sucks.) +# Couldn't find an icon, so i made one myself. I know it sucks. mkdir -p $PKG/usr/share/{applications,pixmaps} cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications cp $CWD/$PRGNAM.png $PKG/usr/share/pixmaps mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION -cp lalnview.help $PKG/usr/doc/$PRGNAM-$VERSION +cp -a lalnview.help $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References diff --git a/academic/lalnview/lalnview.desktop b/academic/lalnview/lalnview.desktop index 5abde1062d..02ad63d625 100644 --- a/academic/lalnview/lalnview.desktop +++ b/academic/lalnview/lalnview.desktop @@ -1,7 +1,7 @@ [Desktop Entry] Categories=Education; Exec=lalnview -Icon=lalnview.png -Name=Lalnview +Icon=lalnview +Name=LalnView StartupNotify=false Type=Application diff --git a/academic/lalnview/lalnview.info b/academic/lalnview/lalnview.info index 9c544ebaef..d3921f29bf 100644 --- a/academic/lalnview/lalnview.info +++ b/academic/lalnview/lalnview.info @@ -7,4 +7,4 @@ DOWNLOAD_x86_64="" MD5SUM_x86_64="" MAINTAINER="Petar Petrov" EMAIL="ppetrov@paju.oulu.fi" -APPROVED="Niels Horn" +APPROVED="rworkman" diff --git a/academic/lalnview/slack-desc b/academic/lalnview/slack-desc index 53cc73d8e2..edda4dd46b 100644 --- a/academic/lalnview/slack-desc +++ b/academic/lalnview/slack-desc @@ -11,9 +11,9 @@ lalnview: lalnview: LalnView is a graphical program for visualizing local alignments lalnview: between two sequences (protein or nucleic acids). lalnview: +lalnview: References: /usr/doc/lalnview-$VERSION/References +lalnview: Home: http://pbil.univ-lyon1.fr/software/lalnview.html lalnview: lalnview: lalnview: lalnview: -lalnview: References: /usr/doc/lalnview-$VERSION/References -lalnview: Home: http://pbil.univ-lyon1.fr/software/lalnview.html |