diff options
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/seaview/README | 4 | ||||
| -rw-r--r-- | academic/seaview/seaview.SlackBuild | 16 | ||||
| -rw-r--r-- | academic/seaview/seaview.info | 8 | ||||
| -rw-r--r-- | academic/seaview/slack-desc | 2 |
4 files changed, 17 insertions, 13 deletions
diff --git a/academic/seaview/README b/academic/seaview/README index c73aa1a016..2d965669cc 100644 --- a/academic/seaview/README +++ b/academic/seaview/README @@ -13,10 +13,10 @@ sequence alignment and molecular phylogeny. Important features are: evolutionarily conserved sites. 4) SeaView computes phylogenetic trees by - a) parsimony, using PHYLIP's dnapars/protpars algorithm, + a) parsimony, using PHYLIP's dnapars/protpars algorithm b) distance, with NJ or BioNJ algorithms on a variety of evolutionary distances, - c) maximum likelihood, driving program PhyML 3.0. + c) maximum likelihood, driving program PhyML 3.1. 5) SeaView prints and draws phylogenetic trees on screen, SVG, PDF or PostScript files. diff --git a/academic/seaview/seaview.SlackBuild b/academic/seaview/seaview.SlackBuild index 446e1bcc76..651cf2a4b3 100644 --- a/academic/seaview/seaview.SlackBuild +++ b/academic/seaview/seaview.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for seaview -# Copyright 2011-2014 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2011-2015 Petar Petrov, petar.petrov@student.oulu.fi # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -23,9 +23,10 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. # Thanks to Niels Horn for correcting the CFLAGS. +# Thanks to developer Dr. Manolo Gouy for all his help. PRGNAM=seaview -VERSION=${VERSION:-4.5.2} +VERSION=${VERSION:-4.5.3.4} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} @@ -74,12 +75,15 @@ find -L . \ # Use our CFLAGS sed -i "/^CFLAGS/s/=/+=/" Makefile +# Enable PDF output. If you do not want it, comment out the next two +# lines. Then you do not need to install PDFlib-Lite. +sed -i "7 c PDF_INC = /usr/include" Makefile +sed -i "8 c PDF_LIB = /usr/lib${LIBDIRSUFFIX}" Makefile + # Point to fltk13 during compilation and make the produced executable # aware of the libraries' custom location -sed -i "14 c FLTK = /usr/include/fltk13" Makefile -sed -i "s:#IFLTK:IFLTK:" Makefile -sed -i "18 c LFLTK = -L/usr/lib${LIBDIRSUFFIX}/fltk13" Makefile -sed -i "29 a LDFLAGS= -Wl,-ldl,--rpath,/usr/lib${LIBDIRSUFFIX}/fltk13" Makefile +sed -i "11 c FLTK = /usr/include/fltk13" Makefile +sed -i "15 c CONFIG = /usr/bin/fltk13-config" Makefile # Point to the correct documentation path and phyml executable name sed -i "s:#HELPFILE:HELPFILE:" Makefile diff --git a/academic/seaview/seaview.info b/academic/seaview/seaview.info index 37187e2609..8e9eea96dc 100644 --- a/academic/seaview/seaview.info +++ b/academic/seaview/seaview.info @@ -1,10 +1,10 @@ PRGNAM="seaview" -VERSION="4.5.2" +VERSION="4.5.3.4" HOMEPAGE="http://doua.prabi.fr/software/seaview" -DOWNLOAD="http://doua.prabi.fr/software/seaview_data/archive/seaview_4.5.2.tar.gz" -MD5SUM="4be7e3afb53decc9f9bfb425a4a92664" +DOWNLOAD="http://doua.prabi.fr/software/seaview_data/archive/seaview_4.5.3.4.tar.gz" +MD5SUM="a223849a96b698a6c60b77d2e2f1b877" DOWNLOAD_x86_64="" MD5SUM_x86_64="" -REQUIRES="Gblocks PhyML clustalo fltk13 muscle" +REQUIRES="fltk13 PDFlib-Lite Gblocks PhyML clustalo muscle" MAINTAINER="Petar Petrov" EMAIL="petar.petrov@student.oulu.fi" diff --git a/academic/seaview/slack-desc b/academic/seaview/slack-desc index f640e3aa45..afcfcfc490 100644 --- a/academic/seaview/slack-desc +++ b/academic/seaview/slack-desc @@ -11,7 +11,7 @@ seaview: seaview: SeaView is a multiplatform, graphical user interface for multiple seaview: sequence alignment and molecular phylogeny. seaview: -seaview: References: /usr/doc/seaview-4.5.1/References +seaview: References: /usr/doc/seaview-4.5.3.4/References seaview: Home: http://pbil.univ-lyon1.fr/software/seaview.html seaview: seaview: |