diff options
Diffstat (limited to 'academic')
| -rw-r--r-- | academic/jalview/jalview | 16 | ||||
| -rw-r--r-- | academic/jalview/jalview.SlackBuild | 27 | ||||
| -rw-r--r-- | academic/jalview/jalview.info | 8 |
3 files changed, 9 insertions, 42 deletions
diff --git a/academic/jalview/jalview b/academic/jalview/jalview index 31813c2c2a..cfdcceef1f 100644 --- a/academic/jalview/jalview +++ b/academic/jalview/jalview @@ -1,16 +1,2 @@ #!/bin/sh - -# This wrapper script is taken from Arch Linux AUR entry of jalview. -# https://aur.archlinux.org/packages/jalview/ -# Maintainer of the PKGBUILD is Stefan Seemayer. - -progname="jalview" -mainclass="jalview.bin.Jalview" -basedir="/usr/share/java/$progname" - -# build classpath: all jars in $basedir -cp=$( ls $basedir/*.jar | xargs echo | sed "s/ /:/g" ); - - -# run jar -"$JAVA_HOME/bin/java" -cp $cp $mainclass +java -jar /opt/jalview/jalview diff --git a/academic/jalview/jalview.SlackBuild b/academic/jalview/jalview.SlackBuild index 1ec9acf47f..30d2cdbe8f 100644 --- a/academic/jalview/jalview.SlackBuild +++ b/academic/jalview/jalview.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for jalview -# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com +# Copyright 2013-2020 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -22,15 +22,14 @@ # OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. -# With help from the jalview PKGBUILD at Arch linux AUR: -# https://aur.archlinux.org/packages/jalview/ - PRGNAM=jalview -VERSION=${VERSION:-2.10.0b1} +VERSION=${VERSION:-2.11.1.0} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} ARCH=noarch +JAVA=j1.8 + CWD=$(pwd) TMP=${TMP:-/tmp/SBo} @@ -42,27 +41,11 @@ set -e rm -rf $PKG mkdir -p $TMP $PKG $OUTPUT cd $TMP -rm -rf $PRGNAM-$VERSION -tar xvf $CWD/$PRGNAM-$VERSION.tar.gz -cd $PRGNAM-$VERSION -chown -R root:root . -find -L . \ - \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ - -o -perm 511 \) -exec chmod 755 {} \; -o \ - \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ - -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; - -mkdir -p $PKG/usr/share/java/$PRGNAM -cp -a *.jar $PKG/usr/share/java/$PRGNAM -# The wrapper is from Arch. Thank you! +install -D -m755 $CWD/$PRGNAM-all-$VERSION-$JAVA.jar $PKG/opt/$PRGNAM/$PRGNAM install -D -m755 $CWD/$PRGNAM $PKG/usr/bin/$PRGNAM mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION -cp -a \ - building.html exampleFeatures.txt LICENSE README_IA \ - $PKG/usr/doc/$PRGNAM-$VERSION -cat $CWD/TheJalviewTutorial_screen.pdf > $PKG/usr/doc/$PRGNAM-$VERSION/Tutorial.pdf cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild diff --git a/academic/jalview/jalview.info b/academic/jalview/jalview.info index 928c20cf89..499422a4d6 100644 --- a/academic/jalview/jalview.info +++ b/academic/jalview/jalview.info @@ -1,10 +1,8 @@ PRGNAM="jalview" -VERSION="2.10.0b1" +VERSION="2.11.1.0" HOMEPAGE="http://www.jalview.org/" -DOWNLOAD="http://sourceforge.net/projects/sboppetrov/files/JalView/2.10/jalview-2.10.0b1.tar.gz \ - http://sourceforge.net/projects/sboppetrov/files/JalView/TheJalviewTutorial_screen.pdf" -MD5SUM="fb5b30202210e21647ecc7da5242bab3 \ - 5e2f8da8f2528049f055263aecd2f8af" +DOWNLOAD="http://www.jalview.org/getdown/release/jalview-all-2.11.1.0-j1.8.jar" +MD5SUM="7f79b598a5bfd25d89adf6fe8c9b98f7" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="jdk" |