diff options
Diffstat (limited to 'academic/tophat')
| -rw-r--r-- | academic/tophat/README | 2 | ||||
| -rw-r--r-- | academic/tophat/slack-desc | 2 | ||||
| -rw-r--r-- | academic/tophat/tophat.SlackBuild | 4 | ||||
| -rw-r--r-- | academic/tophat/tophat.info | 8 |
4 files changed, 9 insertions, 7 deletions
diff --git a/academic/tophat/README b/academic/tophat/README index 79c93851ff..f848a30702 100644 --- a/academic/tophat/README +++ b/academic/tophat/README @@ -8,3 +8,5 @@ Medicine at Johns Hopkins University, the Departments of Mathematics and Molecular and Cell Biology at the University of California, Berkeley and the Department of Stem Cell and Regenerative Biology at Harvard University. + +A recommended dependency is bowtie2. diff --git a/academic/tophat/slack-desc b/academic/tophat/slack-desc index 51a89d7703..24853f0af5 100644 --- a/academic/tophat/slack-desc +++ b/academic/tophat/slack-desc @@ -14,6 +14,6 @@ tophat: high-throughput short read aligner Bowtie, and then analyzes the tophat: mapping results to identify splice junctions between exons. tophat: tophat: Home: http://tophat.cbcb.umd.edu/ -tophat: References: /usr/doc/tophat-2.0.11/References +tophat: References: /usr/doc/tophat-2.0.13/References tophat: tophat: diff --git a/academic/tophat/tophat.SlackBuild b/academic/tophat/tophat.SlackBuild index 9985b3e560..f6785c79fe 100644 --- a/academic/tophat/tophat.SlackBuild +++ b/academic/tophat/tophat.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for tophat -# Copyright 2013-2014 Petar Petrov, petar.petrov@student.oulu.fi +# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -23,7 +23,7 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=tophat -VERSION=${VERSION:-2.0.12} +VERSION=${VERSION:-2.0.13} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} diff --git a/academic/tophat/tophat.info b/academic/tophat/tophat.info index 09c13df77d..37dc3fe290 100644 --- a/academic/tophat/tophat.info +++ b/academic/tophat/tophat.info @@ -1,10 +1,10 @@ PRGNAM="tophat" -VERSION="2.0.12" +VERSION="2.0.13" HOMEPAGE="http://ccb.jhu.edu/software/tophat/" -DOWNLOAD="http://ccb.jhu.edu/software/tophat/downloads/tophat-2.0.12.tar.gz" -MD5SUM="b419604b45d94f6e878a141f05dd1d75" +DOWNLOAD="http://ccb.jhu.edu/software/tophat/downloads/tophat-2.0.13.tar.gz" +MD5SUM="df5c22c85d7c631ee37f61e91f81ae4d" DOWNLOAD_x86_64="" MD5SUM_x86_64="" -REQUIRES="bowtie2 samtools" +REQUIRES="" MAINTAINER="Petar Petrov" EMAIL="petar.petrov@student.oulu.fi" |