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diff --git a/academic/staden/README b/academic/staden/README new file mode 100644 index 0000000000..58460934c6 --- /dev/null +++ b/academic/staden/README @@ -0,0 +1,27 @@ +The programs part of the Staden package provide a fully developed set +of DNA sequence assembly, editing, analysis and more. + +Some of its features include: +GAP4 - Performs assembly, contig joining, assembly checking, repeat search, + experiment suggestion, read pair analysis and contig editing. +GAP5 - The new development version of Gap4, designed to work with the large + volumes of data attainable through the newer sequencing technologies. +PREGAP4 - Provides a graphical user interface to set up the processing + required to prepare trace data for assembly or analysis. +SPIN - Compares pairs of sequences in many ways, often presenting its results + graphically and has a sliding sequence window linked to the plots. +TREV - A rapid and flexible viewer and editor for ABI, ALF or SCF trace files. + +For more information and citing, visit Staden's web page and check the +"References" file in the documentation. + +This requires io_lib and tklib. + +Notes: +1) You should run the SlackBuild in real root environment (su -)! +2) Make sure you have Emacs and Tetex installed, as they are needed + to generate the documentation. +3) Slackware's TCL and TK sources are expected to be in /tmp at build + time. The SlackBuild will unpack them in the build directory and + create the necessary symlinks in /tmp. You can safely delete the + symlinks when the build is complete. |