diff options
Diffstat (limited to 'academic/pysam')
| -rw-r--r-- | academic/pysam/pysam.SlackBuild | 10 |
1 files changed, 8 insertions, 2 deletions
diff --git a/academic/pysam/pysam.SlackBuild b/academic/pysam/pysam.SlackBuild index 91c17b0e1a..1145e63733 100644 --- a/academic/pysam/pysam.SlackBuild +++ b/academic/pysam/pysam.SlackBuild @@ -25,7 +25,7 @@ PRGNAM=pysam VERSION=${VERSION:-0.15.4} -BUILD=${BUILD:-1} +BUILD=${BUILD:-2} TAG=${TAG:-_SBo} #set which python version to install it for @@ -68,8 +68,9 @@ rm -rf $PRGNAM-$VERSION tar xvf $CWD/$PRGNAM-$VERSION.tar.gz cd $PRGNAM-$VERSION chown -R root:root . + find -L . \ - \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ + \( -perm 777 -o -perm 775 -o -perm 751 -o -perm 750 -o -perm 711 -o -perm 555 \ -o -perm 511 \) -exec chmod 755 {} \; -o \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; @@ -79,6 +80,10 @@ find -L . \ #export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX #export HTSLIB_INCLUDE_DIR=/usr/include +#the source does not allow 'read' to 'other', which could cause a problem on reloading a Jupyter-notebook +chmod 644 pysam.egg-info/* + + if $PYTHON2; then python setup.py install --root=$PKG fi @@ -95,6 +100,7 @@ cp -a \ $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild + mkdir -p $PKG/install cat $CWD/slack-desc > $PKG/install/slack-desc |