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Diffstat (limited to 'academic/pyCRAC/README')
| -rw-r--r-- | academic/pyCRAC/README | 6 |
1 files changed, 1 insertions, 5 deletions
diff --git a/academic/pyCRAC/README b/academic/pyCRAC/README index 1583f3e62c..9eb56fc043 100644 --- a/academic/pyCRAC/README +++ b/academic/pyCRAC/README @@ -8,8 +8,6 @@ and reports sense and anti-sense hits. Included is the pipeline used for the analysis of a group of CRAC data sets. -An R-function used for kinetic CRAC analysis can be found in -/usr/share/pyCRAC-$VERSION/kinetic_crac_pipeline References @@ -26,10 +24,9 @@ Granneman S. If you want to run the test suite after installation, see README.tests. + Note on the Crac pipelines: -The CRAC_pipeline_PE.py and CRAC_pipeline_SE.py scripts now ONLY work -with pyCRAC version 1.3.3 and Flexbar version 3.4.0 and later(!) Use the -h flag to get a detailed help menu. The CRAC_pipeline_PE.py script needs to be run from the folder that @@ -44,4 +41,3 @@ The file containing the adapter sequences should be in the fasta format. The chromosome_lengths file should contain two tab-separated columns in which the first column has the chromosome name and the second the chromosome length. - |