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diff --git a/academic/cap3/README b/academic/cap3/README new file mode 100644 index 0000000000..62792bb4c7 --- /dev/null +++ b/academic/cap3/README @@ -0,0 +1,14 @@ +CAP3: A DNA sequence assembly program. + +CAP3 if the third generation of the CAP sequence assembly program. The +program has a capability to clip 5' and 3' low-quality regions of reads. +It uses base quality values in computation of overlaps between reads, +construction of multiple sequence alignments of reads, and generation +of consensus sequences. The program also uses forward-reverse constraints +to correct assembly errors and link contigs. + +This just repackages the binaries provided from upstream. + +If you use CAP3 in any published work, please cite: +Huang, X. and Madan, A. (1999) CAP3: A DNA sequence assembly program. +Genome Res., 9, 868-877. |