diff options
| -rw-r--r-- | academic/isoelectric-point/README | 3 | ||||
| -rw-r--r-- | academic/isoelectric-point/doinst.sh | 3 | ||||
| -rw-r--r-- | academic/isoelectric-point/isoelectric-point.SlackBuild | 90 | ||||
| -rw-r--r-- | academic/isoelectric-point/isoelectric-point.desktop | 7 | ||||
| -rw-r--r-- | academic/isoelectric-point/isoelectric-point.info | 10 | ||||
| -rw-r--r-- | academic/isoelectric-point/slack-desc | 19 |
6 files changed, 132 insertions, 0 deletions
diff --git a/academic/isoelectric-point/README b/academic/isoelectric-point/README new file mode 100644 index 0000000000..63a0bfd36f --- /dev/null +++ b/academic/isoelectric-point/README @@ -0,0 +1,3 @@ +A small application to calculate the isoelectric point of a protein +from its amino acid sequence. Additionally the program outputs the +molecular weight of the protein analysed. diff --git a/academic/isoelectric-point/doinst.sh b/academic/isoelectric-point/doinst.sh new file mode 100644 index 0000000000..5fb28930db --- /dev/null +++ b/academic/isoelectric-point/doinst.sh @@ -0,0 +1,3 @@ +if [ -x /usr/bin/update-desktop-database ]; then + /usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1 +fi diff --git a/academic/isoelectric-point/isoelectric-point.SlackBuild b/academic/isoelectric-point/isoelectric-point.SlackBuild new file mode 100644 index 0000000000..5fcd4ee9cc --- /dev/null +++ b/academic/isoelectric-point/isoelectric-point.SlackBuild @@ -0,0 +1,90 @@ +#!/bin/sh + +# Slackware build script for isoelectric-point +# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and +# hereby submitted to the public domain + +# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING +# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_ +# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT. + +PRGNAM=isoelectric-point +VERSION=${VERSION:-1.0} +BUILD=${BUILD:-1} +TAG=${TAG:-_SBo} + +if [ -z "$ARCH" ]; then + case "$( uname -m )" in + i?86) ARCH=i486 ;; + arm*) ARCH=arm ;; + *) ARCH=$( uname -m ) ;; + esac +fi + +CWD=$(pwd) +TMP=${TMP:-/tmp/SBo} +PKG=$TMP/package-$PRGNAM +OUTPUT=${OUTPUT:-/tmp} + +if [ "$ARCH" = "i486" ]; then + SLKCFLAGS="-O2 -march=i486 -mtune=i686" + LIBDIRSUFFIX="" +elif [ "$ARCH" = "i686" ]; then + SLKCFLAGS="-O2 -march=i686 -mtune=i686" + LIBDIRSUFFIX="" +elif [ "$ARCH" = "x86_64" ]; then + SLKCFLAGS="-O2 -fPIC" + LIBDIRSUFFIX="64" +else + SLKCFLAGS="-O2" + LIBDIRSUFFIX="" +fi + +set -e + +rm -rf $PKG +mkdir -p $TMP $PKG $OUTPUT +cd $TMP +rm -rf $PRGNAM-linux +tar xvf $CWD/$PRGNAM-linux.tar.gz +cd $PRGNAM-linux + +chown -R root:root . +find . \ + \( -perm 777 -o -perm 775 -o -perm 711 -o -perm 555 -o -perm 511 \) \ + -exec chmod 755 {} \; -o \ + \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \ + -exec chmod 644 {} \; + +cd ./sources +qmake -project +qmake + +# Use our CFLAGS +sed -i "/^C.*.*FLAGS/s/=/+=/" Makefile + +CFLAGS="$SLKCFLAGS" \ +CXXFLAGS="$SLKCFLAGS" \ + make + +# Weird name for the binary, let's change it +install -D -m755 sources $PKG/usr/bin/isoelectric-point + +find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ + | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true + +mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION +cp -a README $PKG/usr/doc/$PRGNAM-$VERSION +cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild + +# Menu item and icon +mkdir -p $PKG/usr/share/{applications,pixmaps} +cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications/ +cp ./icons/ip_64.png $PKG/usr/share/pixmaps/isoelectric-point.png + +mkdir -p $PKG/install +cat $CWD/slack-desc > $PKG/install/slack-desc +cat $CWD/doinst.sh > $PKG/install/doinst.sh + +cd $PKG +/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz} diff --git a/academic/isoelectric-point/isoelectric-point.desktop b/academic/isoelectric-point/isoelectric-point.desktop new file mode 100644 index 0000000000..ff4afb4ac8 --- /dev/null +++ b/academic/isoelectric-point/isoelectric-point.desktop @@ -0,0 +1,7 @@ +[Desktop Entry] +Categories=Education; +Exec=isoelectric-point +Icon=isoelectric-point.png +Name=Isoelectric Point Calculator +StartupNotify=false +Type=Application diff --git a/academic/isoelectric-point/isoelectric-point.info b/academic/isoelectric-point/isoelectric-point.info new file mode 100644 index 0000000000..d60e71384a --- /dev/null +++ b/academic/isoelectric-point/isoelectric-point.info @@ -0,0 +1,10 @@ +PRGNAM="isoelectric-point" +VERSION="1.0" +HOMEPAGE="http://isoelectric.ovh.org/" +DOWNLOAD="http://isoelectric.ovh.org/files/isoelectric-point-linux.tar.gz" +MD5SUM="7c2ab92babad116c586f9dc21659d306" +DOWNLOAD_x86_64="" +MD5SUM_x86_64="" +MAINTAINER="Petar Petrov" +EMAIL="ppetrov@paju.oulu.fi" +APPROVED="Niels Horn" diff --git a/academic/isoelectric-point/slack-desc b/academic/isoelectric-point/slack-desc new file mode 100644 index 0000000000..836443d492 --- /dev/null +++ b/academic/isoelectric-point/slack-desc @@ -0,0 +1,19 @@ +# HOW TO EDIT THIS FILE: +# The "handy ruler" below makes it easier to edit a package description. Line +# up the first '|' above the ':' following the base package name, and the '|' +# on the right side marks the last column you can put a character in. You must +# make exactly 11 lines for the formatting to be correct. It's also +# customary to leave one space after the ':'. + + |-----handy-ruler------------------------------------------------------| +isoelectric-point: isoelectric-point (Isoelectric point calculator) +isoelectric-point: +isoelectric-point: A small application to calculate the isoelectric point of a +isoelectric-point: protein. Additionally it outputs the molecular weight of the protein +isoelectric-point: analysed. +isoelectric-point: +isoelectric-point: +isoelectric-point: +isoelectric-point: +isoelectric-point: +isoelectric-point: Home: http://isoelectric.ovh.org/ |