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-rw-r--r--libraries/RBio/RBio.SlackBuild25
-rw-r--r--libraries/RBio/RBio.info10
-rw-r--r--libraries/RBio/autotoolize.diff163
3 files changed, 113 insertions, 85 deletions
diff --git a/libraries/RBio/RBio.SlackBuild b/libraries/RBio/RBio.SlackBuild
index eca520f2e8..bfb5041fbc 100644
--- a/libraries/RBio/RBio.SlackBuild
+++ b/libraries/RBio/RBio.SlackBuild
@@ -1,10 +1,29 @@
#!/bin/sh
# Slackware build script for RBio
-# Written by Kyle Guinn <elyk03@gmail.com>
+
+# Copyright 2013 Kyle Guinn <elyk03@gmail.com>, USA
+# All rights reserved.
+#
+# Redistribution and use of this script, with or without modification, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+# notice, this list of conditions and the following disclaimer.
+#
+# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
+# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
+# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=RBio
-VERSION=${VERSION:-2.0.1}
+VERSION=${VERSION:-2.1.1}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
@@ -69,9 +88,11 @@ CFLAGS="$SLKCFLAGS" \
--docdir=/usr/doc/$PRGNAM-$VERSION \
--enable-shared \
--disable-static \
+ --disable-dependency-tracking \
--build=$ARCH-slackware-linux
make
+make check
make install-strip DESTDIR=$PKG
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
diff --git a/libraries/RBio/RBio.info b/libraries/RBio/RBio.info
index 359864df75..81bb77ba3e 100644
--- a/libraries/RBio/RBio.info
+++ b/libraries/RBio/RBio.info
@@ -1,10 +1,10 @@
PRGNAM="RBio"
-VERSION="2.0.1"
-HOMEPAGE="http://www.cise.ufl.edu/research/sparse/RBio/"
-DOWNLOAD="http://www.cise.ufl.edu/research/sparse/RBio/RBio-2.0.1.tar.gz"
-MD5SUM="5091a231fa676298e1edf4cb8bf88ca5"
+VERSION="2.1.1"
+HOMEPAGE="https://www.cise.ufl.edu/research/sparse/RBio/"
+DOWNLOAD="https://www.cise.ufl.edu/research/sparse/RBio/RBio-2.1.1.tar.gz"
+MD5SUM="07495e73e29683a8b348811a34e0e396"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
-REQUIRES="UFconfig"
+REQUIRES="SuiteSparse_config"
MAINTAINER="Kyle Guinn"
EMAIL="elyk03@gmail.com"
diff --git a/libraries/RBio/autotoolize.diff b/libraries/RBio/autotoolize.diff
index d31eae387f..4c495922ee 100644
--- a/libraries/RBio/autotoolize.diff
+++ b/libraries/RBio/autotoolize.diff
@@ -2,9 +2,9 @@ diff --git a/Demo/Makefile.am b/Demo/Makefile.am
new file mode 100644
--- /dev/null
+++ b/Demo/Makefile.am
-@@ -0,0 +1,23 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include $(UFCONFIG_CFLAGS)
-+LDADD = $(top_builddir)/Source/librbio.la $(UFCONFIG_LIBS)
+@@ -0,0 +1,22 @@
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS)
++LDADD = $(top_builddir)/Source/librbio.la $(SUITESPARSECONFIG_LIBS)
+
+EXTRA_DIST = \
+ RBdemo.out
@@ -19,19 +19,17 @@ new file mode 100644
+RBdemo_SOURCES = RBdemo.c
+
+RB = \
-+ ../RBio/private/west0479.rua
++ $(top_srcdir)/RBio/private/west0479.rua
+
+check-local: $(check_PROGRAMS) $(RB)
-+ ./RBdemo < ../RBio/private/west0479.rua
++ ./RBdemo < $(top_srcdir)/RBio/private/west0479.rua
+
-+clean-local:
-+ -$(RM) temp.rb
++CLEANFILES = temp.rb
diff --git a/Include/Makefile.am b/Include/Makefile.am
new file mode 100644
--- /dev/null
+++ b/Include/Makefile.am
-@@ -0,0 +1,2 @@
-+pkgincludedir = $(includedir)/rbio
+@@ -0,0 +1 @@
+pkginclude_HEADERS = RBio.h
diff --git a/Makefile.am b/Makefile.am
new file mode 100644
@@ -68,7 +66,7 @@ new file mode 100644
--- /dev/null
+++ b/Source/Makefile.am
@@ -0,0 +1,18 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include $(UFCONFIG_CFLAGS)
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS)
+
+RBIOSRC = \
+ RBio.c
@@ -77,24 +75,24 @@ new file mode 100644
+noinst_LTLIBRARIES = librbioi.la librbiol.la
+
+librbioi_la_SOURCES = $(RBIOSRC)
-+librbioi_la_LIBADD = $(UFCONFIG_LIBS)
++librbioi_la_LIBADD = $(SUITESPARSECONFIG_LIBS)
+librbioi_la_CPPFLAGS = $(AM_CPPFLAGS) -DINT
+
+librbiol_la_SOURCES = $(RBIOSRC)
-+librbiol_la_LIBADD = $(UFCONFIG_LIBS)
++librbiol_la_LIBADD = $(SUITESPARSECONFIG_LIBS)
+
+librbio_la_SOURCES =
+librbio_la_LIBADD = librbioi.la librbiol.la
-+librbio_la_LDFLAGS = -no-undefined -version-info 2:1:0
++librbio_la_LDFLAGS = -no-undefined -version-number 2:1:1
diff --git a/Tcov/Makefile.am b/Tcov/Makefile.am
new file mode 100644
--- /dev/null
+++ b/Tcov/Makefile.am
-@@ -0,0 +1,94 @@
+@@ -0,0 +1,92 @@
+AM_CC = gcc
+AM_CFLAGS = -O0 -g --coverage
-+AM_CPPFLAGS = -I$(top_srcdir)/Include $(UFCONFIG_CFLAGS)
-+LDADD = $(UFCONFIG_LIBS)
++AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS)
++LDADD = $(SUITESPARSECONFIG_LIBS)
+
+dist_noinst_DATA = \
+ matrices/Tina_DisCog.tar.gz \
@@ -127,87 +125,95 @@ new file mode 100644
+ RBdemo \
+ RBtest
+
-+RBio.c: ../Source/RBio.c
-+ $(LN_S) -f $< $@
-+
-+RBdemo.c: ../Demo/RBdemo.c
-+ $(LN_S) -f $< $@
-+
-+RBdemo_SOURCES = RBdemo.c RBio.c
-+RBtest_SOURCES = RBtest.c RBio.c
++RBdemo_SOURCES = $(top_srcdir)/Source/RBio.c $(top_srcdir)/Demo/RBdemo.c
++RBtest_SOURCES = $(top_srcdir)/Source/RBio.c RBtest.c
+
+TAR = tar -O -xvvzf
+
+RB = \
-+ ../RBio/private/bcsstk01.rb \
-+ ../RBio/private/farm.rb \
-+ ../RBio/private/lap_25.pse \
-+ ../RBio/private/lap_25.rb \
-+ ../RBio/private/west0479.rb \
-+ ../RBio/private/west0479.rua \
-+ $(dist_noinst_DATA)
-+
-+check-local: $(check_PROGRAMS) $(RB)
-+ -./RBdemo ../RBio/private/bcsstk01.rb
-+ -./RBdemo ../RBio/private/farm.rb
-+ -./RBdemo ../RBio/private/lap_25.pse
-+ -./RBdemo ../RBio/private/lap_25.rb
-+ -./RBdemo ../RBio/private/west0479.rb
-+ -./RBdemo ../RBio/private/west0479.rua
-+ -$(TAR) matrices/dwg961a.tar.gz dwg961a/dwg961a.rb | ./RBdemo
-+ -$(TAR) matrices/mhd1280a.tar.gz mhd1280a/mhd1280a.rb | ./RBdemo
-+ -$(TAR) matrices/mhd1280b.tar.gz mhd1280b/mhd1280b.rb | ./RBdemo
-+ -$(TAR) matrices/qc324.tar.gz qc324/qc324.rb | ./RBdemo
-+ -$(TAR) matrices/plskz362.tar.gz plskz362/plskz362.rb | ./RBdemo
-+ -$(TAR) matrices/west0067.tar.gz west0067/west0067.rb | ./RBdemo
-+ -$(TAR) matrices/Tina_DisCog.tar.gz Tina_DisCog/Tina_DisCog.rb | ./RBdemo
-+ -./RBdemo matrices/m4.rb
-+ -./RBdemo matrices/s4.rb
-+ -./RBdemo matrices/m4b.rb
-+ -./RBdemo mangled/1.rb
-+ -./RBdemo mangled/2.rb
-+ -./RBdemo mangled/3.rb
-+ -./RBdemo mangled/4.rb
-+ -./RBdemo mangled/5.rb
-+ -./RBdemo mangled/6.rb
-+ -./RBdemo mangled/7.rb
-+ -./RBdemo mangled/8.rb
-+ -./RBdemo mangled/9.rb
-+ -./RBdemo mangled/10.rb
-+ -./RBdemo mangled/11.rb
-+ -./RBdemo mangled/12.rb
-+ -./RBdemo mangled/13.rb
-+ -./RBdemo mangled/14.rb
-+ -./RBdemo mangled/15.rb
++ $(top_srcdir)/RBio/private/bcsstk01.rb \
++ $(top_srcdir)/RBio/private/farm.rb \
++ $(top_srcdir)/RBio/private/lap_25.pse \
++ $(top_srcdir)/RBio/private/lap_25.rb \
++ $(top_srcdir)/RBio/private/west0479.rb \
++ $(top_srcdir)/RBio/private/west0479.rua \
++ $(addprefix $(srcdir)/,$(dist_noinst_DATA))
++
++COV = \
++ $(top_srcdir)/Source/RBio.c \
++ $(top_srcdir)/Demo/RBdemo.c \
++ $(srcdir)/RBtest.c
++
++check-local: $(check_PROGRAMS) $(RB) $(COV)
++ -./RBdemo $(top_srcdir)/RBio/private/bcsstk01.rb
++ -./RBdemo $(top_srcdir)/RBio/private/farm.rb
++ -./RBdemo $(top_srcdir)/RBio/private/lap_25.pse
++ -./RBdemo $(top_srcdir)/RBio/private/lap_25.rb
++ -./RBdemo $(top_srcdir)/RBio/private/west0479.rb
++ -./RBdemo $(top_srcdir)/RBio/private/west0479.rua
++ -$(TAR) $(srcdir)/matrices/dwg961a.tar.gz dwg961a/dwg961a.rb | ./RBdemo
++ -$(TAR) $(srcdir)/matrices/mhd1280a.tar.gz mhd1280a/mhd1280a.rb | ./RBdemo
++ -$(TAR) $(srcdir)/matrices/mhd1280b.tar.gz mhd1280b/mhd1280b.rb | ./RBdemo
++ -$(TAR) $(srcdir)/matrices/qc324.tar.gz qc324/qc324.rb | ./RBdemo
++ -$(TAR) $(srcdir)/matrices/plskz362.tar.gz plskz362/plskz362.rb | ./RBdemo
++ -$(TAR) $(srcdir)/matrices/west0067.tar.gz west0067/west0067.rb | ./RBdemo
++ -$(TAR) $(srcdir)/matrices/Tina_DisCog.tar.gz Tina_DisCog/Tina_DisCog.rb | ./RBdemo
++ -./RBdemo $(srcdir)/matrices/m4.rb
++ -./RBdemo $(srcdir)/matrices/s4.rb
++ -./RBdemo $(srcdir)/matrices/m4b.rb
++ -./RBdemo $(srcdir)/mangled/1.rb
++ -./RBdemo $(srcdir)/mangled/2.rb
++ -./RBdemo $(srcdir)/mangled/3.rb
++ -./RBdemo $(srcdir)/mangled/4.rb
++ -./RBdemo $(srcdir)/mangled/5.rb
++ -./RBdemo $(srcdir)/mangled/6.rb
++ -./RBdemo $(srcdir)/mangled/7.rb
++ -./RBdemo $(srcdir)/mangled/8.rb
++ -./RBdemo $(srcdir)/mangled/9.rb
++ -./RBdemo $(srcdir)/mangled/10.rb
++ -./RBdemo $(srcdir)/mangled/11.rb
++ -./RBdemo $(srcdir)/mangled/12.rb
++ -./RBdemo $(srcdir)/mangled/13.rb
++ -./RBdemo $(srcdir)/mangled/14.rb
++ -./RBdemo $(srcdir)/mangled/15.rb
+ -./RBtest
-+ -gcov *.c > gcov.out
-+ -grep "#####" RBio.c.gcov | wc -l
++ -gcov -o $(builddir) $(COV) > gcov.out
++ -grep -c "#####" RBio.c.gcov
+
-+clean-local:
-+ -$(RM) gcov.out *.gcov *.gcda *.gcno temp*.rb
++CLEANFILES = gcov.out *.gcov *.gcda *.gcno temp*.rb
diff --git a/configure.ac b/configure.ac
new file mode 100644
--- /dev/null
+++ b/configure.ac
-@@ -0,0 +1,31 @@
-+AC_PREREQ([2.68])
-+AC_INIT([RBio],[2.0.1],[davis@cise.ufl.edu])
+@@ -0,0 +1,41 @@
++# -*- Autoconf -*-
++# Process this file with autoconf to produce a configure script.
++
++AC_PREREQ([2.69])
++AC_INIT([RBio],[2.1.1],[DrTimothyAldenDavis@gmail.com],[rbio],[http://www.suitesparse.com/])
+AC_CONFIG_SRCDIR([Source/RBio.c])
-+AC_CONFIG_HEADER([config.h])
++AC_CONFIG_HEADERS([config.h])
+AM_INIT_AUTOMAKE([foreign])
+LT_INIT
+
++# Checks for programs.
+AC_PROG_INSTALL
+AC_PROG_CC
+
+LIBS_SAVED=$LIBS
+
-+AC_CHECK_HEADERS([stddef.h stdlib.h string.h])
-+
++# Checks for libraries.
+PKG_PROG_PKG_CONFIG
-+PKG_CHECK_MODULES([UFCONFIG],[ufconfig],
++PKG_CHECK_MODULES([SUITESPARSECONFIG],[suitesparseconfig],
+ [],
-+ [AC_MSG_ERROR([cannot find ufconfig])])
++ [AC_MSG_ERROR([cannot find suitesparseconfig])])
++
++# Checks for header files.
++AC_CHECK_HEADERS([stddef.h stdlib.h string.h])
++
++# Checks for typedefs, structures, and compiler characteristics.
++
++# Checks for library functions.
+
+LIBS=$LIBS_SAVED
+
@@ -225,7 +231,7 @@ diff --git a/rbio.pc.in b/rbio.pc.in
new file mode 100644
--- /dev/null
+++ b/rbio.pc.in
-@@ -0,0 +1,11 @@
+@@ -0,0 +1,12 @@
+prefix=@prefix@
+exec_prefix=@exec_prefix@
+libdir=@libdir@
@@ -234,6 +240,7 @@ new file mode 100644
+Name: @PACKAGE_NAME@
+Description: Toolbox for reading/writing sparse matrices in Rutherford/Boeing format
+Version: @PACKAGE_VERSION@
-+Requires.private: ufconfig
++URL: @PACKAGE_URL@
++Requires.private: suitesparseconfig
+Libs: -L${libdir} -lrbio
+Cflags: -I${includedir}/rbio
generated by cgit v1.2.3 (git 2.26.2) at 2024-11-24 11:18:12 +0000