diff options
| author | Petar Petrov <petar.petrov@student.oulu.fi> | 2015-03-27 15:28:40 +0700 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2015-03-27 15:28:40 +0700 |
| commit | 812815694128a9ff596bb117b6a92decc2767707 (patch) | |
| tree | c0f5c4368937552461490173f31cea9294f135a1 /academic/ugene | |
| parent | 3f04be71a0a920e11d5d706875c0a8810a2f685b (diff) | |
| download | slackbuilds-812815694128a9ff596bb117b6a92decc2767707.tar.gz | |
academic/ugene: Updated for version 1.16.1.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/ugene')
| -rw-r--r-- | academic/ugene/README | 4 | ||||
| -rw-r--r-- | academic/ugene/slack-desc | 2 | ||||
| -rw-r--r-- | academic/ugene/ugene.SlackBuild | 2 | ||||
| -rw-r--r-- | academic/ugene/ugene.info | 6 |
4 files changed, 9 insertions, 5 deletions
diff --git a/academic/ugene/README b/academic/ugene/README index 74e8a62736..a163595629 100644 --- a/academic/ugene/README +++ b/academic/ugene/README @@ -37,10 +37,14 @@ program. Almost all of them can be found at SlackBuilds.org: - clustalo (Clustal Omega) - clustalw (Multiple Sequence Alignment) - cufflinks (A reference-guided assembler for RNA-Seq experiments) +- cutadapt (Trim adapters from high-throughput sequencing reads) +- fastqc (A quality control tool for high throughput sequence data) - ncbi-blast (BLAST: Basic Local Alignment Search Tool) - ncbi-blast-plus (BLAST+ Command Line Applications) - PhyML (Phylogenetic estimation using Maximum Likelihood) - samtools (Sequence Alignment/Map Tools) +- snpEff (Genetic variant annotation and effect prediction toolbox) +- spades (SPAdes Genome Assembler) - spidey (mRNA-to-genomic alignment) - t_coffee (A multiple sequence alignment program) - tabix (Generic indexer for TAB-delimited genome position files ) diff --git a/academic/ugene/slack-desc b/academic/ugene/slack-desc index a2a9314c8a..8750636927 100644 --- a/academic/ugene/slack-desc +++ b/academic/ugene/slack-desc @@ -16,4 +16,4 @@ ugene: user nterface. The toolkit supports multiple biological data formats ugene: and allows the retrieval of data from remote data sources. ugene: ugene: Home: http://ugene.unipro.ru/ -ugene: References: /usr/doc/ugene-1.15.1/References +ugene: References: /usr/doc/ugene-1.16.1/References diff --git a/academic/ugene/ugene.SlackBuild b/academic/ugene/ugene.SlackBuild index da4ed2f7af..0c2ccc3c1a 100644 --- a/academic/ugene/ugene.SlackBuild +++ b/academic/ugene/ugene.SlackBuild @@ -23,7 +23,7 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=ugene -VERSION=${VERSION:-1.15.1} +VERSION=${VERSION:-1.16.1} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} diff --git a/academic/ugene/ugene.info b/academic/ugene/ugene.info index 3f35ecb453..68dc9570aa 100644 --- a/academic/ugene/ugene.info +++ b/academic/ugene/ugene.info @@ -1,8 +1,8 @@ PRGNAM="ugene" -VERSION="1.15.1" +VERSION="1.16.1" HOMEPAGE="http://ugene.unipro.ru/" -DOWNLOAD="http://ugene.unipro.ru/downloads/ugene-1.15.1.tar.gz" -MD5SUM="7269c1f49cfdb5911ce7d8904b6c6af3" +DOWNLOAD="http://ugene.unipro.ru/downloads/ugene-1.16.1.tar.gz" +MD5SUM="f4856b22228c83c9f8a5341afb5825c5" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" |