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| author | Petar Petrov <slackalaxy@gmail.com> | 2016-06-05 15:51:46 +0300 |
|---|---|---|
| committer | Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2016-06-05 22:28:03 +0700 |
| commit | b6456152b10e4c01ee304557130dc8b19747186a (patch) | |
| tree | 5cbc1a371dc2a1abb0e70cc791c9663607c27c46 /academic/tophat/tophat.SlackBuild | |
| parent | 8f0d485cccc8057929671e36af7a0258be50ea69 (diff) | |
| download | slackbuilds-b6456152b10e4c01ee304557130dc8b19747186a.tar.gz | |
academic/tophat: Updated for version 2.1.1
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/tophat/tophat.SlackBuild')
| -rw-r--r-- | academic/tophat/tophat.SlackBuild | 26 |
1 files changed, 5 insertions, 21 deletions
diff --git a/academic/tophat/tophat.SlackBuild b/academic/tophat/tophat.SlackBuild index d8ae387909..4254c78d6c 100644 --- a/academic/tophat/tophat.SlackBuild +++ b/academic/tophat/tophat.SlackBuild @@ -23,7 +23,7 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=tophat -VERSION=${VERSION:-2.1.0} +VERSION=${VERSION:-2.1.1} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} @@ -62,41 +62,25 @@ cd $TMP rm -rf $PRGNAM-$VERSION tar xvf $CWD/$PRGNAM-$VERSION.tar.gz cd $PRGNAM-$VERSION -tar xvf $CWD/seqan-v1.4.2.tar.gz || tar xvf $CWD/seqan-seqan-v1.4.2.tar.gz chown -R root:root . find -L . \ \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ -o -perm 511 \) -exec chmod 755 {} \; -o \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ - -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; + -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -sed -e 's|-gdwarf-2||' \ - -e '/define.*esyscmd/d' \ - -e 's/svnversion/Unversioned directory/' \ - -i configure.ac - -sed -e 's|make $(SAMPROG)|make -e $(SAMPROG)|' \ - -i src/Makefile.am - -# fixes seqan issues, Thanks to ARCH -rm -rf src/SeqAn-1.3 -patch -p1 < $CWD/fix_build_w_seqan1.4.patch -sed -e "s|-I./SeqAn-1.3|-I$TMP/$PRGNAM-$VERSION/seqan-seqan-v1.4.2/core/include|" configure.ac - -autoreconf -fi -CFLAGS="$SLKCFLAGS -I$TMP/$PRGNAM-$VERSION/seqan-seqan-v1.4.2/core/include" \ +CFLAGS="$SLKCFLAGS" \ CXXFLAGS="$SLKCFLAGS" \ ./configure \ --prefix=/usr \ --libdir=/usr/lib${LIBDIRSUFFIX} \ --sysconfdir=/etc \ + --with-boost-libdir=/usr/lib${LIBDIRSUFFIX} \ --localstatedir=/var \ --mandir=/usr/man \ --build=$ARCH-slackware-linux -sed -i 's|-L/usr/lib||' Makefile src/Makefile - -make -j1 +make make install DESTDIR=$PKG find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ |