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| author | Petar Petrov <petar.petrov@student.oulu.fi> | 2013-12-14 07:31:21 +0700 |
|---|---|---|
| committer | Erik Hanson <erik@slackbuilds.org> | 2013-12-14 10:53:05 -0600 |
| commit | 70013017755f78c0636a880522351dc5b588277e (patch) | |
| tree | eac41e23ff997e41eb9b813e8fed747f6d8ac8ea /academic/bowtie/patches/seqan-fix-setBegin-call.patch | |
| parent | ca3a131931b1c0a9fca77630daddd3349048a569 (diff) | |
| download | slackbuilds-70013017755f78c0636a880522351dc5b588277e.tar.gz | |
academic/bowtie: Updated for version 1.0.0.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/bowtie/patches/seqan-fix-setBegin-call.patch')
| -rw-r--r-- | academic/bowtie/patches/seqan-fix-setBegin-call.patch | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/academic/bowtie/patches/seqan-fix-setBegin-call.patch b/academic/bowtie/patches/seqan-fix-setBegin-call.patch new file mode 100644 index 0000000000..56c8763117 --- /dev/null +++ b/academic/bowtie/patches/seqan-fix-setBegin-call.patch @@ -0,0 +1,42 @@ +Description: Proper type-casting in using seqan::_setBegin(). + Required by newer versions of GCC. +Forwarded: no +Author: Ognyan Kulev <ogi@debian.org> +Last-Update: 2013-04-18 + +--- a/pat.h ++++ b/pat.h +@@ -82,20 +82,20 @@ + ~ReadBuf() { + clearAll(); reset(); + // Prevent seqan from trying to free buffers +- _setBegin(patFw, NULL); +- _setBegin(patRc, NULL); +- _setBegin(qual, NULL); +- _setBegin(patFwRev, NULL); +- _setBegin(patRcRev, NULL); +- _setBegin(qualRev, NULL); +- _setBegin(name, NULL); ++ _setBegin(patFw, (Dna5*)NULL); ++ _setBegin(patRc, (Dna5*)NULL); ++ _setBegin(qual, (char*)NULL); ++ _setBegin(patFwRev, (Dna5*)NULL); ++ _setBegin(patRcRev, (Dna5*)NULL); ++ _setBegin(qualRev, (char*)NULL); ++ _setBegin(name, (char*)NULL); + for(int j = 0; j < 3; j++) { +- _setBegin(altPatFw[j], NULL); +- _setBegin(altPatFwRev[j], NULL); +- _setBegin(altPatRc[j], NULL); +- _setBegin(altPatRcRev[j], NULL); +- _setBegin(altQual[j], NULL); +- _setBegin(altQualRev[j], NULL); ++ _setBegin(altPatFw[j], (Dna5*)NULL); ++ _setBegin(altPatFwRev[j], (Dna5*)NULL); ++ _setBegin(altPatRc[j], (Dna5*)NULL); ++ _setBegin(altPatRcRev[j], (Dna5*)NULL); ++ _setBegin(altQual[j], (char*)NULL); ++ _setBegin(altQualRev[j], (char*)NULL); + } + } + |